PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10090786 to PF03479 (DUF296)

VIMSS10090786 has 574 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-25   74.3   0.3    1.5e-24   72.7   0.5    1.7  2  VIMSS10090786  


Domain annotation for each sequence (and alignments):
>> VIMSS10090786  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.57      0.57      58      67 ..      77      94 ..      55     104 .. 0.65
   2 !   72.7   0.5   1.5e-24   1.5e-24       2     105 ..     107     222 ..     106     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.57
                   EEEEEEEEE........T CS
         DUF296 58 lslsGtilp........d 67
                   +++sGt++p        +
  VIMSS10090786 77 ITASGTFTPrsslrkrrG 94
                   677888888655555443 PP

  == domain 2  score: 72.7 bits;  conditional E-value: 1.5e-24
                    EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT....EE-S-EEEEEEEEEEEE...........TTEEEEEEEEETT.SE CS
         DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee....kllgrfeilslsGtilp...........dglHlhvslaged.gq 81 
                    ph +++++Gedi++ i++f  +   r+++vls++Gav+nvt l +g++    ++++++ei+sl+ + +            +g  + ++++g+  g+
  VIMSS10090786 107 PHSFTVNKGEDIIKRIMSFTANG-SRGISVLSVNGAVANVTILPHGSSrrvmTFKEEYEIVSLTNNTMAisesggvknktGG--WRITIGGAAgGR 199
                    899********************.*****************55555557889999***********999****999999888..9999999777** PP

                    EEEEEEEEE.EEEEEEEEEEEEE- CS
         DUF296  82 vvgGhlaegplvaattvevvvaef 105
                    v gG la g+l+aa++v+vv+++f
  VIMSS10090786 200 VHGGALA-GSLIAASPVQVVIGSF 222
                    *******.99************99 PP



Or compare VIMSS10090786 to CDD or PaperBLAST