PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10101975 to PF03479 (DUF296)

VIMSS10101975 has 334 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-31   95.2   0.5    2.2e-31   94.7   0.5    1.2  1  VIMSS10101975  


Domain annotation for each sequence (and alignments):
>> VIMSS10101975  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.5   2.2e-31   2.2e-31       1     105 [.     151     265 ..     151     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 2.2e-31
                    TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT.....EE-S-EEEEEEEEEEEE..........TTEEEEEEEEETTS CS
         DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee.....kllgrfeilslsGtilp..........dglHlhvslagedg 80 
                    +ph++++++Ged+ + i++f+++    a+cvl a+G vs+vt r  d  +     +++grfeilslsGt++p          +g  ++vsla++dg
  VIMSS10101975 151 TPHIITVNAGEDVTKRIISFSQQG-SLAICVLCANGVVSSVTlRQPD--SsggtlTYEGRFEILSLSGTFMPsdsdgtrsrtGG--MSVSLASPDG 241
                    59**********************.*****************44444..356999999**************999999999888..********** PP

                    EEEEEEEEEE.EEEEEEEEEEEEE- CS
         DUF296  81 qvvgGhlaegplvaattvevvvaef 105
                    +vvgG +a g lvaat+++vvv++f
  VIMSS10101975 242 RVVGGGVA-GLLVAATPIQVVVGTF 265
                    ********.99************99 PP



Or compare VIMSS10101975 to CDD or PaperBLAST