PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10102262 to PF03479 (DUF296)

VIMSS10102262 has 404 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-31   93.6   0.5    7.1e-31   93.1   0.5    1.2  1  VIMSS10102262  


Domain annotation for each sequence (and alignments):
>> VIMSS10102262  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.5   7.1e-31   7.1e-31       1     105 [.     167     281 ..     167     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 7.1e-31
                    TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE...EEECTTT.....EE-S-EEEEEEEEEEEE..........TTEEEEEEEEET CS
         DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt...rladgee.....kllgrfeilslsGtilp..........dglHlhvslage 78 
                    +phvl +++Ged+  +i++f+++   ra+c+lsa+G +snvt   ++    +     +++grfeilsl+G++++          +g  ++v+lag+
  VIMSS10102262 167 TPHVLIVNAGEDVTMKIMTFSQQG-SRAICILSANGPISNVTlrqSM----TsggtlTYEGRFEILSLTGSFMQndsggtrsraGG--MSVCLAGP 255
                    59**********************.*****************65333....134569999**************999999998888..******** PP

                    TSEEEEEEEEEE.EEEEEEEEEEEEE- CS
         DUF296  79 dgqvvgGhlaegplvaattvevvvaef 105
                    dg+v+gG la g   aa++v+v+v++f
  VIMSS10102262 256 DGRVFGGGLA-GLFLAAGPVQVMVGTF 281
                    **********.99************99 PP



Or compare VIMSS10102262 to CDD or PaperBLAST