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Align VIMSS10109623 to PF03479 (DUF296)

VIMSS10109623 has 419 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-32   96.0   1.0    1.4e-31   95.4   1.0    1.3  1  VIMSS10109623  


Domain annotation for each sequence (and alignments):
>> VIMSS10109623  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   1.0   1.4e-31   1.4e-31       1     105 [.     179     293 ..     179     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.4e-31
                    TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE...EEECTTT.....EE-S-EEEEEEEEEEEE..........TTEEEEEEEEET CS
         DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt...rladgee.....kllgrfeilslsGtilp..........dglHlhvslage 78 
                    +phvl++++Ged+  +i++f+++   ra+c+lsa+G +snvt   ++    +     +++g+feilsl+G+++p          +g  ++vslag+
  VIMSS10109623 179 TPHVLTVNAGEDVTMKIMTFSQQG-SRAICILSANGPISNVTlrqSM----TsggtlTYEGHFEILSLTGSFIPsesggtrsraGG--MSVSLAGQ 267
                    59**********************.*****************65333....134569999**************999999999888..******** PP

                    TSEEEEEEEEEE.EEEEEEEEEEEEE- CS
         DUF296  79 dgqvvgGhlaegplvaattvevvvaef 105
                    dg+v+gG la g  +aa++v+v+v++f
  VIMSS10109623 268 DGRVFGGGLA-GLFIAAGPVQVMVGSF 293
                    **********.99************99 PP



Or compare VIMSS10109623 to CDD or PaperBLAST