PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS102930 to PF03479 (DUF296)

VIMSS102930 has 140 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-25   76.1   0.2    1.7e-25   75.8   0.2    1.0  1  VIMSS102930  


Domain annotation for each sequence (and alignments):
>> VIMSS102930  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.2   1.7e-25   1.7e-25       2     103 ..       9     118 ..       8     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.7e-25
                  EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT......EE-S-EEEEEEEEEEEE..TT..EEEEEEEEETTSEEEEEEEE CS
       DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee......kllgrfeilslsGtilp..dg..lHlhvslagedgqvvgGhla 88 
                  +++l le+Gedive+i++fa +++ +  +v s+iGa+++v  ++++ ++      ++++++e++sl G+i++  +g  +Hlh+++++++ +++ Ghla
  VIMSS102930   9 TILLVLEKGEDIVECITTFADDQDLTFTSV-SGIGACDDVVlKFFNLTTkqyeekHITEPLELTSLLGNISRldNGhfAHLHATFGTQSYETFSGHLA 105
                  67899*************************.***********9999999877777777**************874489*********99********* PP

                  EE.EEEEEEEEEEEE CS
       DUF296  89 egplvaattvevvva 103
                   + +++++t+e++++
  VIMSS102930 106 -K-AIVSATAEIILT 118
                  .5.688*******97 PP



Or compare VIMSS102930 to CDD or PaperBLAST