PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS102930 to PF03479 (PCC)

VIMSS102930 has 140 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-34  103.6   0.4    5.2e-34  103.3   0.4    1.0  1  VIMSS102930  


Domain annotation for each sequence (and alignments):
>> VIMSS102930  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.4   5.2e-34   5.2e-34       2     114 ..       9     119 ..       8     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 5.2e-34
          PCC   2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisptdgepflHlhvsladedgqvvgGhlv 99 
                  +++l le+Gedi+e++++fa++++++  +v s+iGa++++ l++++ ++k+yeek++++p+E++sl G+is+ d+  f+Hlh++++ ++ +++ Ghl+
  VIMSS102930   9 TILLVLEKGEDIVECITTFADDQDLTFTSV-SGIGACDDVVLKFFNLTTKQYEEKHITEPLELTSLLGNISRLDNGHFAHLHATFGTQSYETFSGHLA 105
                  68899*************************.*****************************************8777********************** PP

          PCC 100 eglvaattvevviae 114
                  +++v ++t+e++++ 
  VIMSS102930 106 KAIV-SATAEIILTV 119
                  6666.*******986 PP



Or compare VIMSS102930 to CDD or PaperBLAST