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Align VIMSS124362 to PF03479 (DUF296)

VIMSS124362 has 285 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-17   47.8   0.0    2.3e-12   33.6   0.1    2.1  2  VIMSS124362  


Domain annotation for each sequence (and alignments):
>> VIMSS124362  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     1e-05     1e-05       5      98 ..      28     138 ..      25     143 .. 0.79
   2 !   33.6   0.1   2.3e-12   2.3e-12       2     104 ..     179     284 ..     178     285 .] 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1e-05
                  EEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT.......EE-.........S-EEEEEEEEEEEE.TT...EEEEEEEEETTSEE CS
       DUF296   5 lrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee.......kll.........grfeilslsGtilp.dg...lHlhvslagedgqv 82 
                  l+++pG  ++ea+ e+  + g+ +a++    Ga++ +  ++ +++                   gr  i  l+ t+ + dg   lH h++   edg  
  VIMSS124362  28 LTFKPGRSVLEAVHEALAETGCDSAMIEVRGGAFAPLA-YV-TPTlsddgihA-AwysdihapdGRAPIEDLVMTFGRrDGepfLHGHGVWRHEDGLR 122
                  6899***********************88888888888.44.34435555550.15556667779999999999999964479*************** PP

                  EEEEEEEE.EEEEEEE CS
       DUF296  83 vgGhlaegplvaattv 98 
                   +Gh++ +    a  v
  VIMSS124362 123 AAGHVMPKDSQFAELV 138
                  *****98766655555 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 2.3e-12
                  EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTTEE-S-EEEEEEEEEEEE..TT...EEEEEEEEETTSEEEEEEEEEE.EEE CS
       DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgeekllgrfeilslsGtilp..dg...lHlhvslagedgqvvgGhlaegplva 94 
                  +++ rl+p+e i+ aie+ a ++gi+ a++ ++iG++  +t +adg+       e+l   Gt++p  +g   + l +++ + +++++ G +a g   +
  VIMSS124362 179 AVLCRLKPNEPIHPAIERTAAEHGIERATL-HGIGSLVGCT-FADGQVMESAASELLIRKGTLSPdrSGqakAKLDIAIVDTECTIFEGEIAYGVDAV 274
                  6789*************************9.**********.88888866679************662267899*******99***********8889 PP

                  EEEEEEEEEE CS
       DUF296  95 attvevvvae 104
                  + t ev + e
  VIMSS124362 275 CITFEVLIVE 284
                  9*****9975 PP



Or compare VIMSS124362 to CDD or PaperBLAST