PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS55933 to PF03479 (DUF296)

VIMSS55933 has 130 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-30   91.7   0.7    2.1e-30   91.5   0.7    1.0  1  VIMSS55933  


Domain annotation for each sequence (and alignments):
>> VIMSS55933  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.7   2.1e-30   2.1e-30       3     104 ..       5     108 ..       3     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 2.1e-30
                 EEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT..EE-S-EEEEEEEEEEEETTEEEEEEEEETTSEEEEEEEEEE.EEEEEEE CS
      DUF296   3 hvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee..kllgrfeilslsGtilpdglHlhvslagedgqvvgGhlaegplvaattv 98 
                 ++lrl +G d+ ++i +++++++i+a+++ s++G++s ++ rlad+ +  ++  +feilslsGt++ +++Hlh+++a+++g+v+gGhl+eg+l+  tt+
  VIMSS55933   5 IALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHiRLADSVStlQVSAPFEILSLSGTLTYQHCHLHIAVADAQGRVWGGHLLEGNLI-NTTA 102
                 689*************************************99999999888889*************99**********************666.**** PP

                 EEEEEE CS
      DUF296  99 evvvae 104
                 e++++ 
  VIMSS55933 103 ELMIHH 108
                 ***986 PP



Or compare VIMSS55933 to CDD or PaperBLAST