PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS75287 to PF03479 (DUF296)

VIMSS75287 has 143 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-29   87.9   0.1    3.4e-29   87.7   0.1    1.1  1  VIMSS75287  


Domain annotation for each sequence (and alignments):
>> VIMSS75287  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.1   3.4e-29   3.4e-29       1     106 [.      13     120 ..      13     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 3.4e-29
                 TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT..EE-S-EEEEEEEEEEEETTEEEEEEEEETTSEEEEEEEEEE.EEEEE CS
      DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee..kllgrfeilslsGtilpdglHlhvslagedgqvvgGhlaegplvaat 96 
                 r ++lrl pG+++++++ +fa++++ +aa++  ++G+++++  r+a +e    l+g fe++sl+Gt+ ++g Hlh ++++++g+++gGh++ g +++ t
  VIMSS75287  13 RFYALRLLPGQEVFSQLHAFAQQQQLHAAWIAGCTGSLTDIAlRYAGQEGttLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHMMPG-CTVRT 110
                 5799**************************************9999888886667**************889*********************.***** PP

                 EEEEEEEE-C CS
      DUF296  97 tvevvvaefe 106
                 t+e+v++++e
  VIMSS75287 111 TLELVIGSLE 120
                 *******986 PP



Or compare VIMSS75287 to CDD or PaperBLAST