PaperBLAST – Find papers about a protein or its homologs

 

Align XP_017215280.1 to PF03479 (PCC)

XP_017215280.1 has 382 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-30   91.8   0.5      3e-30   91.2   0.5    1.3  1  XP_017215280.1  


Domain annotation for each sequence (and alignments):
>> XP_017215280.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.5     3e-30     3e-30       2     115 ..     194     306 ..     193     308 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 3e-30
             PCC   2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp........tdgepflHlhvslad 88 
                     ++v+++++Ged+++++++f+++  +r++c+lsa+Ga+sn+t   + +++++  + +++g+fEi+slsG+++         t+g     l+vsla+
  XP_017215280.1 194 PHVITVNAGEDVAAKITAFSQQG-PRTVCILSANGAISNVT---LRQPATTGGTVSYEGRFEIISLSGSLTMsenngnsrTNG-----LSVSLAG 279
                     8**********************.*****************...77788888889*****************88766666666.....******* PP

             PCC  89 edgqvvgGhlveglvaattvevviaef 115
                      dg+v+gG ++ +l aat+v+v++++f
  XP_017215280.1 280 TDGRVLGGGVAGALLAATPVQVIVGSF 306
                     ***********77************99 PP



Or compare XP_017215280.1 to CDD or PaperBLAST