PaperBLAST – Find papers about a protein or its homologs

 

Align XP_017236315.1 to PF03479 (DUF296)

XP_017236315.1 has 345 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-30   91.8   0.1    2.5e-30   91.3   0.1    1.2  1  XP_017236315.1  


Domain annotation for each sequence (and alignments):
>> XP_017236315.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.1   2.5e-30   2.5e-30       1     106 [.     161     275 ..     161     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 2.5e-30
                     TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE..EEECTTT.....EE-S-EEEEEEEEEEEE.........TTEEEEEEEEETT CS
          DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt..rladgee.....kllgrfeilslsGtilp.........dglHlhvslaged 79 
                     +phv++++pGedi+++i +fa++r  ra+c+lsa+G+vs vt  + +   +     +++grfeil lsG++l          +g  l+vs++++d
  XP_017236315.1 161 TPHVIQIAPGEDIASKILAFAQQR-PRALCILSANGSVSAVTlrQPM---SadstfTYEGRFEILCLSGSYLLseggprnrtGG--LSVSICTPD 249
                     59**********************.*****************64333...133578999**************99999999888..********* PP

                     SEEEEEEEEEE.EEEEEEEEEEEEE-C CS
          DUF296  80 gqvvgGhlaegplvaattvevvvaefe 106
                     g v+gG +  g+l+aa+ v+ +v++f+
  XP_017236315.1 250 GLVIGGAIG-GRLIAASLVQAIVCSFV 275
                     *********.99************996 PP



Or compare XP_017236315.1 to CDD or PaperBLAST