XP_017238115.1 has 315 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-27 82.8 0.5 5.1e-27 80.8 0.2 1.9 2 XP_017238115.1
Domain annotation for each sequence (and alignments):
>> XP_017238115.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.2 0.0 0.068 0.068 50 73 .. 59 82 .. 43 93 .. 0.71
2 ! 80.8 0.2 5.1e-27 5.1e-27 1 115 [. 119 230 .. 119 232 .. 0.92
Alignments for each domain:
== domain 1 score: -0.2 bits; conditional E-value: 0.068
PCC 50 ekeyeekellgpfEilslsGtisp 73
e+++e++e +++E+ ++sG ++
XP_017238115.1 59 ERKQEHHEEHQEMEMGNISGALVI 82
333345555569999999998765 PP
== domain 2 score: 80.8 bits; conditional E-value: 5.1e-27
PCC 1 rvfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp......tdgepflHlhvslade 89
r +vl++++G+d++e++++fa+++ + +++vls++G v+n+t + +++ ++l+g+fEilsl+G ++p +g l+v+la+
XP_017238115.1 119 RSHVLEISNGSDVVECIATFAQRR-LVGVSVLSGSGIVNNVT---LRQPAAPGGVITLQGRFEILSLTGAFLPapsppqANG-----LTVYLAGG 204
68**********************.*****************...56666666679*****************888887777.....******** PP
PCC 90 dgqvvgGhlveglvaattvevviaef 115
+gqvvgG ++ +lva+++v v++a+f
XP_017238115.1 205 QGQVVGGTVMGALVASGPVMVIAATF 230
**********77**********9998 PP
Or compare XP_017238115.1 to CDD or PaperBLAST