biolip::3htnB has 139 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-30 90.6 0.1 5.1e-30 90.5 0.1 1.0 1 biolip::3htnB
Domain annotation for each sequence (and alignments):
>> biolip::3htnB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.5 0.1 5.1e-30 5.1e-30 2 114 .. 11 117 .. 10 120 .. 0.95
Alignments for each domain:
== domain 1 score: 90.5 bits; conditional E-value: 5.1e-30
PCC 2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisptdgepflHlhvsladedgqvvgGh 97
+++ +++ +i+++l++f++e+gi ++++ ++iGa+ + tl++++ ++++ ++ +++Ei +l+G+is ++++++lHlh++++++d ++++Gh
biolip::3htnB 11 KYIVSINNHTEIVKALNAFCKEKGILSGSI-NGIGAIGELTLRFFNPKDDK----TFREQMEISNLTGNISSMNEQVYLHLHITVGRSDYSALAGH 101
5899**************************.***************99998....9*****************999******************** PP
PCC 98 lveglvaattvevviae 114
l++++ ++ e v+
biolip::3htnB 102 LLSAIQ-NGAGEFVVED 117
**8888.9***999976 PP
Or compare biolip::3htnB to CDD or PaperBLAST