NP_596818.1 has 279 amino acids
Query: TMEM33_Pom33 [M=240]
Accession: PF03661.17
Description: Transmembrane protein 33/Nucleoporin POM33
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-39 119.7 14.6 8.6e-39 119.4 14.6 1.0 1 NP_596818.1
Domain annotation for each sequence (and alignments):
>> NP_596818.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.4 14.6 8.6e-39 8.6e-39 15 238 .. 19 256 .. 5 258 .. 0.92
Alignments for each domain:
== domain 1 score: 119.4 bits; conditional E-value: 8.6e-39
TMEM33_Pom33 15 anklelalwlarlltvlftvlyil.plflssesasaYykallanaatsalrLhqrl.p....qvqlsreflqrllledschyLlysliFlfsapvtl 105
+++ +++++ ++++++++vly l ++ ++s++ + a+ ++++++a++L++ + p + +++++f++rl+l+d+++y++++l l+ +p+ +
NP_596818.1 19 VKNTQFVWFSGQVIVLISSVLYALqAIPFRSAPPFLFKSAAFGAIVAYAIVLYKTYsPnltsRASWNKHFFARLMLDDNVQYFILALSMLIDRPILF 115
6789********************999999999999******************98642222569******************************** PP
TMEM33_Pom33 106 allPvalfallHaasytltlld..........llgsnslvvarllislvesqsqniLkliAlsEivlmpllivllllgraslltpliYyqfLslRYs 192
+l P+a++a++H+++y++++l ++ s ++ v +ll + + sq q +++l+A E +l++ l++ ++l ++s+ ++ Y fL++RY+
NP_596818.1 116 SLAPYAIYATFHISTYLRSVLLpaiypnisdaKTASYASRVSNLLNQYTRSQFQPAMQLVASLETFLLFRLFFGVFLRKNSISRLVGYIFFLRMRYT 212
***************************997776666666677777999999********************************************** PP
TMEM33_Pom33 193 SrrnPytrnafselrilleklankpscPavirklieklislvsrla 238
+ tr+ ++++ ++++ l++ +++P+vi+++ ++ vs+ +
NP_596818.1 213 --NSHFTRASIKAVSLRMDRLVADNRVPPVIKNAWHTFKTYVSKFG 256
..9*********************************9999999875 PP
Or compare NP_596818.1 to CDD or PaperBLAST