VIMSS1140981 has 174 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-24 72.8 40.1 1.1e-15 44.0 13.3 3.0 3 VIMSS1140981
Domain annotation for each sequence (and alignments):
>> VIMSS1140981
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.0 13.3 1.1e-15 1.1e-15 1 73 [] 9 79 .. 9 79 .. 0.93
2 ! 34.8 18.6 8.2e-13 8.2e-13 3 72 .. 67 135 .. 65 136 .. 0.92
3 ! 14.2 1.5 2.2e-06 2.2e-06 12 50 .. 134 172 .. 133 174 .] 0.92
Alignments for each domain:
== domain 1 score: 44.0 bits; conditional E-value: 1.1e-15
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
++Gil+++ Gi+al++P+ ++la+++l G ++++sG+++l+aaf+ r+ +g ++++++++aG+++l+
VIMSS1140981 9 VSGILALLGGIAALAFPLPVSLAVTVLAGCVFVASGAFGLWAAFSDRGMPSRG--AAAFFSLVSLVAGVWMLA 79
58******************************************888877766..5689************95 PP
== domain 2 score: 34.8 bits; conditional E-value: 8.2e-13
DUF308 3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+++++++G+++l++P+a ++ l++++G+l+lvsG+v+l ++a+++ + fwl+ lsG+++ +Gl++l
VIMSS1140981 67 SLVSLVAGVWMLANPLAGMVSLTLMLGALFLVSGVVRLGLSLATWR-GTVMFWLMALSGLISAGLGLFIL 135
6899**********************************88887777.666799999************98 PP
== domain 3 score: 14.2 bits; conditional E-value: 2.2e-06
DUF308 12 laliwPgaallalviliGvlllvsGivqlvaafaarkke 50
++l +P a+l++l +l++v l+v G++ ++ +fa+rk++
VIMSS1140981 134 ILLRLPEASLVLLGTLVAVELIVMGATLVAMGFALRKSG 172
7899*****************************999865 PP
Or compare VIMSS1140981 to CDD or PaperBLAST