VIMSS156823 has 175 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-37 111.4 61.3 1.2e-22 66.2 11.7 3.0 3 VIMSS156823
Domain annotation for each sequence (and alignments):
>> VIMSS156823
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.2 11.7 1.2e-22 1.2e-22 1 73 [] 11 82 .. 11 82 .. 0.96
2 ! 43.7 16.7 1.3e-15 1.3e-15 3 70 .. 70 137 .. 68 137 .. 0.93
3 ! 26.7 16.8 2.7e-10 2.7e-10 2 46 .. 127 171 .. 126 175 .] 0.91
Alignments for each domain:
== domain 1 score: 66.2 bits; conditional E-value: 1.2e-22
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
l Gi++iilG+++l++Pg++ll++++++G+lll+sGi++ +++f+ rk+++ ++w l+ Gil+i++G+lllf
VIMSS156823 11 LAGIAMIILGVWFLFHPGISLLTSTLMFGFLLLISGIFHTISYFSDRKSQNVSGW-VLADGILSILLGFLLLF 82
57**********************************************9999988.788************98 PP
== domain 2 score: 43.7 bits; conditional E-value: 1.3e-15
DUF308 3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGll 70
Gil+i+lG+l+l++ + +l+lv+l+G+++l++Gi++ ++af+a++++ +g + l +Gi+ ii+G++
VIMSS156823 70 GILSILLGFLLLFNEFDGTLTLVLLFGMWVLFAGIMRTIGAFTAKQNNVQGWGWILTIGIIGIIVGFI 137
9*****************************************88887776655*************86 PP
== domain 3 score: 26.7 bits; conditional E-value: 2.7e-10
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaa 46
+Gi+ ii+G++al++P+++++ +v++++++++v Gi +++ f+
VIMSS156823 127 IGIIGIIVGFIALFNPVVSAIGIVLVVAIFFIVQGIGAIATFFFI 171
7**************************************877754 PP
Or compare VIMSS156823 to CDD or PaperBLAST