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Align VIMSS17572 to PF03729 (DUF308)

VIMSS17572 has 190 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.13
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   66.1  38.0    3.3e-16   45.7  14.0    3.1  3  VIMSS17572  


Domain annotation for each sequence (and alignments):
>> VIMSS17572  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  14.0   3.3e-16   3.3e-16       2      72 ..      27      97 ..      26      98 .. 0.95
   2 !   33.1  14.1     3e-12     3e-12       1      72 [.      84     153 ..      84     154 .. 0.93
   3 !    3.8   2.9     0.004     0.004      13      40 ..     153     180 ..     151     190 .] 0.79

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.3e-16
      DUF308  2 lGillivlGilalllPvaallalvllfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGllll 72
                +++ll ++G+l++++P++++ +l++++G+ll++sGi+ i++ f++r++n +  + g+l+++ yl++G++++
  VIMSS17572 27 IAVLLFIVGLLCISFPFVSGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFI 97
                68*****************************************99999988888999************98 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 3e-12
      DUF308   1 llGillivlGilalllPvaallalvllfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGllll 72 
                 l+++ ++++G +++  P + ++a++ +++ l++v+G++++++ +  r+++ +g wl+l++G+l ++++ ++l
  VIMSS17572  84 LVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGVIRLMSWY--RQRSMKGSWLQLVIGVLDIVIAWIFL 153
                 5899************************************9888..55567778****************97 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.004
      DUF308  13 alllPvaallalvllfGilllvsGivqi 40 
                 + + P+++++ +++l+Gi l++s++  +
  VIMSS17572 153 LGATPMVSVTLVSTLVGIELIFSAASLF 180
                 55789*****************998766 PP



Or compare VIMSS17572 to CDD or PaperBLAST