VIMSS306066 has 190 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-23 68.7 37.1 1.3e-15 43.8 13.5 3.1 3 VIMSS306066
Domain annotation for each sequence (and alignments):
>> VIMSS306066
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.8 13.5 1.3e-15 1.3e-15 2 72 .. 27 97 .. 26 98 .. 0.94
2 ! 35.5 13.1 4.9e-13 4.9e-13 1 72 [. 84 153 .. 84 154 .. 0.93
3 ! 4.8 2.9 0.0018 0.0018 13 40 .. 153 180 .. 151 190 .] 0.78
Alignments for each domain:
== domain 1 score: 43.8 bits; conditional E-value: 1.3e-15
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+++ll i+G+l++ +P++++ +l++++G+ll++sGi+ +v+ f++r+++ ++ + +l+++ y+++G++++
VIMSS306066 27 IAVLLFIVGLLCISFPFVSGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFI 97
68*****************************************99998888877888************98 PP
== domain 2 score: 35.5 bits; conditional E-value: 4.9e-13
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
l++++++++G +++ P + ++a++ +i+ l++v+G+++l++ + r+++ +g wl+l++G+l+i+++ ++l
VIMSS306066 84 LVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGVIRLMSWY--RQRSMKGSWLQLVIGVLDIVIAWIFL 153
5899************************************9888..66667778**************9997 PP
== domain 3 score: 4.8 bits; conditional E-value: 0.0018
DUF308 13 aliwPgaallalviliGvlllvsGivql 40
+ + P+++++++++l+G+ l++s++ +
VIMSS306066 153 LGATPMVSVTLVSTLVGIELIFSAASLF 180
5578******************997766 PP
Or compare VIMSS306066 to CDD or PaperBLAST