VIMSS322538 has 208 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.6e-27 79.6 44.5 2.3e-16 46.2 16.7 3.1 3 VIMSS322538
Domain annotation for each sequence (and alignments):
>> VIMSS322538
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.6 19.4 3.5e-16 3.5e-16 1 73 [] 46 116 .. 46 116 .. 0.94
2 ! 46.2 16.7 2.3e-16 2.3e-16 1 73 [] 102 171 .. 102 171 .. 0.95
3 ! 11.3 2.7 1.7e-05 1.7e-05 11 48 .. 168 205 .. 168 208 .] 0.90
Alignments for each domain:
== domain 1 score: 45.6 bits; conditional E-value: 3.5e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
llGi++i++Gi+al ++a++++v liG+ ++++G++++++af++++++g f++++++G+ly+++Gl+ll+
VIMSS322538 46 LLGIVMIAAGIAALSDVVFATIISVKLIGLTAIAAGAFEIIHAFWTKGWGG--FLWQIVLGALYLAFGLVLLT 116
68******************************************8888444..789**************995 PP
== domain 2 score: 46.2 bits; conditional E-value: 2.3e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
+lG l++++G+++l+ P +l+l++++G++ll+sG+++ v +f +++++++w++l+sGi+ ++aG+l+lf
VIMSS322538 102 VLGALYLAFGLVLLTQPASGALILTYFLGAVLLASGVIRCVLSF---AHWRQNGWMMLISGIFGLLAGVLILF 171
68******************************************...55778889****************98 PP
== domain 3 score: 11.3 bits; conditional E-value: 1.7e-05
DUF308 11 ilaliwPgaallalviliGvlllvsGivqlvaafaark 48
++++ +P +++ al +l+Gv l+ G++ l+ a+++ +
VIMSS322538 168 LILFGFPTISVWALGFLLGVDLISHGLAWLLYALQSVR 205
5899**************************99997655 PP
Or compare VIMSS322538 to CDD or PaperBLAST