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Align VIMSS535253 to PF03729 (DUF308)

VIMSS535253 has 197 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-30   89.6  45.4    4.3e-16   45.3  20.6    3.1  3  VIMSS535253  


Domain annotation for each sequence (and alignments):
>> VIMSS535253  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3  20.6   4.3e-16   4.3e-16       1      72 [.      28      98 ..      28      99 .. 0.93
   2 !   27.9   7.6   1.1e-10   1.1e-10      19      72 ..     105     156 ..     103     157 .. 0.90
   3 !   40.2   9.0   1.7e-14   1.7e-14       2      50 ..     144     192 ..     143     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 4.3e-16
       DUF308  1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
                 l+Gil+++lG+l+l+wPg+++l+ ++ +Gv+ll+ Gi+q+v af + + + g+++ll++sG+ ++i++ll++
  VIMSS535253 28 LSGILSLALGVLVLVWPGISILVAAVAFGVYLLITGIAQVVFAF-SLHVSAGSRVLLFISGAASLILALLAF 98
                 58******************************************.555577789999************987 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.1e-10
       DUF308  19 aallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72 
                   a+l+l+i+iG+ +++ G++  ++a++  +  g+g  + +++G+++++aG+++l
  VIMSS535253 105 YAILLLAIWIGIGFIFRGVATTISAVSDPNLPGRG--WNIFLGVISLLAGIVVL 156
                  68999*********************777777665..8**************98 PP

  == domain 3  score: 40.2 bits;  conditional E-value: 1.7e-14
       DUF308   2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkke 50 
                  lG++++++Gi++l+ P+ ++++l+i++G++++v G+++++++f  rk +
  VIMSS535253 144 LGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGVFEIISSFGIRKAS 192
                  8******************************************998865 PP



Or compare VIMSS535253 to CDD or PaperBLAST