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Align VIMSS680884 to PF03729 (DUF308)

VIMSS680884 has 189 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-27   80.8  34.8    3.7e-17   48.7  16.3    3.1  3  VIMSS680884  


Domain annotation for each sequence (and alignments):
>> VIMSS680884  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  16.3   3.7e-17   3.7e-17       1      72 [.      26      97 ..      26      98 .. 0.97
   2 !   44.8  10.6   6.1e-16   6.1e-16       1      72 [.      84     153 ..      84     154 .. 0.95
   3 !    4.3   1.2    0.0026    0.0026      17      42 ..     157     182 ..     151     189 .] 0.80

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.7e-17
       DUF308  1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
                 ++++ll++ Gi++li+P+a+++al+++iG+lll+sGi+ +v+ +a+r+ + ++ +  +l+G+ yi++G++++
  VIMSS680884 26 IVAVLLLLGGIFCLINPLASGAALSMVIGILLLLSGIAMIVGMIANRSDNFWPMVAGILLGVAYIVMGYVFI 97
                 789*********************************************9999999***************98 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 6.1e-16
       DUF308   1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72 
                  llG+++i+ G +++++P + ++ l+++++vl+ ++G+++l+++f  ++ ++ g wl++l+G+l++++ +ll+
  VIMSS680884  84 LLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGVLRLINGF--KDLKRPGAWLQILLGVLDLVITYLLV 153
                  68******************************************..8888999*************988775 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0026
       DUF308  17 PgaallalviliGvlllvsGivqlva 42 
                  P+++++++++l+G+ +l+s++  ++ 
  VIMSS680884 157 PLMSITMVTTLVGIEMLFSSFSCFMV 182
                  999****************9987754 PP



Or compare VIMSS680884 to CDD or PaperBLAST