VIMSS865486 has 537 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-14 38.5 16.2 1e-10 28.1 2.3 3.6 4 VIMSS865486
Domain annotation for each sequence (and alignments):
>> VIMSS865486
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.3 0.41 0.41 36 62 .. 321 347 .. 319 352 .. 0.49
2 ! 24.3 6.2 1.6e-09 1.6e-09 1 72 [. 366 436 .. 366 437 .. 0.89
3 ? 0.6 5.0 0.037 0.037 6 41 .. 428 463 .. 426 480 .. 0.81
4 ! 28.1 2.3 1e-10 1e-10 1 50 [. 481 530 .. 481 535 .. 0.89
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 0.41
DUF308 36 GivqlvaafaarkkegggfwllllsGi 62
G+ ++ ++++ +++ + + +l+s+i
VIMSS865486 321 GFGAILLSLTTSSRRTRFVFGSLFSSI 347
555665555444444443334555555 PP
== domain 2 score: 24.3 bits; conditional E-value: 1.6e-09
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
++G++++ilGi+ l++P+ al a+ l+++ + +++ q++ + ++ +++++ + ++s ++ +++ + l+
VIMSS865486 366 IVGWIMVILGIISLTLPQYALRAFGALVAFTGIGFSVHQILDTAKTIL-KDKQKNFFIISYLIVFALSVALI 436
79***************************************9995555.5555678899*****99999887 PP
== domain 3 score: 0.6 bits; conditional E-value: 0.037
DUF308 6 liilGilaliwPgaallalviliGvlllvsGivqlv 41
+l ++++ + + +++ +++G++l++ + v+l
VIMSS865486 428 VFALSVALISNNRLLIFLAHYFLGIFLIIYSYVRLR 463
5678899999999999999**********9999884 PP
== domain 4 score: 28.1 bits; conditional E-value: 1e-10
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkke 50
+++il+ +lGi+++++P a+ ++i+iGvll++ G++++++ ++a++k+
VIMSS865486 481 IEAILAFALGIIIIVNPRAFNRQSIIIIGVLLIIYGFFKVIGELFAQRKT 530
689**************************************777666654 PP
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