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Align VIMSS15439 to PF04338 (DUF481)

VIMSS15439 has 301 amino acids

Query:       DUF481  [M=212]
Accession:   PF04338.12
Description: Protein of unknown function, DUF481
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   27.9   1.7    1.2e-10   27.9   1.7    2.0  3  VIMSS15439  


Domain annotation for each sequence (and alignments):
>> VIMSS15439  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.37      0.37     101     116 ..      24      39 ..      19      51 .. 0.57
   2 !   27.9   1.7   1.2e-10   1.2e-10      93     200 ..      95     207 ..      91     212 .. 0.81
   3 ?   -1.4   0.0      0.11      0.11     179     193 ..     269     283 ..     244     301 .] 0.50

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.37
      DUF481 101 ktklsleaGpgyrytk 116
                 +  + +++G+ y+ ++
  VIMSS15439  24 RNDWHFNIGAMYEIEN 39 
                 4445555555554443 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.2e-10
      DUF481  93 GyrlidtdktklsleaGpgyrytkytdeeeeedeeev..ilrlsldyeykisdnvsftqdlevev.....nleggsnttlrsetgltvkltdalslkis 184
                  y+++++d+ ++ l +G     ++y+de  + +++     ++++ d++ k++d+++f+  l++++     n +g ++t++ +etgl++ +++ ++l+++
  VIMSS15439  95 HYQFLENDDFSFGLTGGFRNYGYHYVDE--PGKDTANmqRWKIAPDWDVKLTDDLRFNGWLSMYKfandlNTTGYADTRVETETGLQYTFNETVALRVN 191
                 59****************9999999999..44444441255555577889*************863333366788999********************* PP

      DUF481 185 yevdydsdppegkkkt 200
                 y++++  + ++++++ 
  VIMSS15439 192 YYLERGFNMDDSRNNG 207
                 ****999999866554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.11
      DUF481 179 lslkisyevdydsdp 193
                 ls++++y  +++ + 
  VIMSS15439 269 LSVSLEYAFEWQDHD 283
                 333333333333322 PP



Or compare VIMSS15439 to CDD or PaperBLAST