PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3630635 to PF04341 (DUF485)

VIMSS3630635 has 110 amino acids

Query:       DUF485  [M=89]
Accession:   PF04341.16
Description: Protein of unknown function, DUF485
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-34  102.7   0.2    5.1e-34  102.5   0.2    1.0  1  VIMSS3630635  


Domain annotation for each sequence (and alignments):
>> VIMSS3630635  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.2   5.1e-34   5.1e-34       2      87 ..      11      96 ..      10      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 5.1e-34
        DUF485  2 aspkFqeLvrkrrrfafpltaiflvvYflfvllvafapdllatkvvegnitvgillgllqfvltfvltglYvrrAnrefDplaeei 87
                  ++pkFq++v+k++ ++++lt+i+lv+Y++f+llv++++++l    + g++t+gi+lgl+++vl+f+l+g+Y+++An+++D+l+ee 
  VIMSS3630635 11 RNPKFQKMVKKKSALSWTLTIIMLVLYVGFMLLVGYNKEFLMSSFSGGVTTWGIPLGLGIIVLSFLLCGVYSYIANNTLDQLSEEA 96
                  79********************************************88**********************************9985 PP



Or compare VIMSS3630635 to CDD or PaperBLAST