PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001241035.1 to PF04379 (DUF525)

NP_001241035.1 has 443 amino acids

Query:       DUF525  [M=87]
Accession:   PF04379.18
Description: ApaG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-27   81.2   0.0    4.4e-27   80.5   0.0    1.3  1  NP_001241035.1  


Domain annotation for each sequence (and alignments):
>> NP_001241035.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   4.4e-27   4.4e-27       6      86 ..     325     415 ..     322     416 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4.4e-27
          DUF525   6 peeeryvFaYtirieneg.........eesvqLlsrhwiitdangkveevegegVvgeqPvLkpg.esfeYtsgvsletpsGsmeGsytmv 86 
                     ++ ++y+FaY+ir++ e           +s+qL +rhwii++++  +++v+g++V+g+ P+L+pg ++f Y+s+++l tpsGs+eGs+t+ 
  NP_001241035.1 325 DDLGEYLFAYSIRLSLEPqgciingmsFSSCQLHWRHWIIRANDIVISDVSGKAVIGQFPLLRPGaQEFVYQSCTPLPTPSGSIEGSFTFI 415
                     56689************999*****9889***********************************************************996 PP



Or compare NP_001241035.1 to CDD or PaperBLAST