PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10078768 to PF04379 (DUF525)

VIMSS10078768 has 436 amino acids

Query:       DUF525  [M=87]
Accession:   PF04379.14
Description: ApaG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-29   87.1   0.0    6.6e-29   86.4   0.0    1.3  1  VIMSS10078768  


Domain annotation for each sequence (and alignments):
>> VIMSS10078768  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   6.6e-29   6.6e-29       6      86 ..     318     408 ..     314     409 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 6.6e-29
                    TTB--EEEEEEEEEEE-S.........SS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TT.EEEEEEEEEEESSSEEEEEEEEEEE CS
         DUF525   6 peeekyvfaYsirienes.........eesvqLlsRhweitdadgkveevegeGvvGeqPlLepg.esFeYtSgvsletpsGsmeGsytmv 86 
                    ++   y++aYsir+++++         ++s+qL++Rhw+i+++++ +++v+ge+v+G++PlL++g e+F+Y+S+ s++t+ Gs+ Gs+t+v
  VIMSS10078768 318 DQPPAYWYAYSIRMSLMPegcilngthHSSCQLYWRHWVIRADNEVIDNVNGEAVIGKYPLLQAGeEEFVYESCSSFPTTAGSIDGSFTFV 408
                    56779************9********999************************************************************98 PP



Or compare VIMSS10078768 to CDD or PaperBLAST