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Align VIMSS46946 to PF04393 (DUF535)

VIMSS46946 has 288 amino acids

Query:       DUF535  [M=281]
Accession:   PF04393.13
Description: Protein of unknown function (DUF535)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-70  222.4   7.7    4.4e-70  222.2   7.7    1.0  1  VIMSS46946  


Domain annotation for each sequence (and alignments):
>> VIMSS46946  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   7.7   4.4e-70   4.4e-70       5     280 ..      20     281 ..      16     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 4.4e-70
      DUF535   5 elrrrlkfllrsllhprqtkkllqfln..qspllkellkkqprllekllrpYlsknlsakqrleaivdhytfleelltaellqellekkgltlaelegk 101
                  ++r+l+f++r++l+ +q++ l+++ln  ++++lk++++++p+ +++++r++++k+++a++r+++++++++      +  ++ ++l ++++ +      
  VIMSS46946  20 IFWRYLRFQARKILYFPQVRLLEKTLNkeKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVD------KGLACFKFLPEEQIIFS----- 107
                 5799**********************9667889**************************************......7788999****888887..... PP

      DUF535 102 eeeeleleLsinagqrkEGelsLelrdedkqllysltFtllkregektllIGalQGpkkena..kelikqlTKachGlrPkrLllealkllaealgveq 198
                  +e++el L +n + ++EG+++++l++++  ++ +++F+++    e++ll +++QG+k ++    e+ k lTK+chGlrP +Ll+e+ k+l+e l++++
  VIMSS46946 108 FDEDFELFLGYNYNVCEEGFWAFSLKFKK-YTILQCNFCFT---LENNLLLSCIQGHKYKDFniLEINKILTKKCHGLRPVALLIECSKMLCEILKLQA 202
                 7999***********************66.88*********...99************9998889********************************** PP

      DUF535 199 ilavsnkghvyrqlryrlkkkkklvadYdefWeelgGea...kdkeyyeLPleeerkdleeiaskKRseYrkRyalldeleeqia 280
                  l+v++k    +q r+++ k+k +++dY+++W e+gGe    ++++yy+L  ++++k+leei+s+KRs+Y+kR+a+l+e++++++
  VIMSS46946 203 TLGVHEK----NQIRSQKGKEKGYFVDYQKIWLENGGELikiNKHKYYKL--HHSQKNLEEIPSQKRSMYKKRFAMLEEIKTNLD 281
                 *******....7999*9********************988889999**99..99***************************9875 PP



Or compare VIMSS46946 to CDD or PaperBLAST