PaperBLAST – Find papers about a protein or its homologs

 

Align Q5F9H4 to PF04402 (SIMPL)

Q5F9H4 has 244 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-28   86.0   2.4    2.5e-28   85.8   2.4    1.0  1  Q5F9H4    


Domain annotation for each sequence (and alignments):
>> Q5F9H4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   2.4   2.5e-28   2.5e-28       2     204 ..      38     241 ..      37     244 .] 0.76

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 2.5e-28
   SIMPL   2 tVtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagi.eekdiqtsglsvspeydykngkrkitgyrasqsltvtvrdldklgellda 103
             +++ +a +eva+D+++ +++v +eg+d +++ ae  ++ n+++   k + g  +++ ++ s     p+y+y+ng+r  tg++ +++++ + rd+d+l++++++
  Q5F9H4  38 EFSESAGIEVAQDTMSARFQVAAEGRDKNAVNAEFVKKFNNFTRKSK-N-GSfKTELVSRS---AMPRYQYTNGRRIQTGWEERAEFKAEGRDFDALNRFIAD 135
             6677999**************************************99.5.75244433333...45***********************************99 PP

   SIMPL 104 lveaganridgvsfslsde..delreearkeAvkdArakAealAkalgvklgrvvsisesgasg.........apppppaamaaaaaa....aaaaaaatpie 191
             +++  a +++  +fs+s e  +e  +++ k+Av  ++a+Ae+lA  lg++  ++v+++ ++ ++         a    ++ +a+++aa    +  ++aa+ +e
  Q5F9H4 136 VQTD-A-SLEDTDFSVSRErrNEVIDQVSKDAVLRFKARAEKLAGVLGASGYKIVKLNFGQIGShiagdgavrA----KMLRAMPMAAsvnmKGTDSAAPGVE 232
             9884.3.69********44456666666666***************************9444446666644332....3344444444343345555555555 PP

   SIMPL 192 pgeitvsasVtvt 204
                 ++s+s+++t
  Q5F9H4 233 ----EISISINGT 241
             ....555555544 PP



Or compare Q5F9H4 to CDD or PaperBLAST