PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS302354 to PF04461 (DUF520)

VIMSS302354 has 163 amino acids

Query:       DUF520  [M=161]
Accession:   PF04461.17
Description: Protein of unknown function (DUF520)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-69  220.0   3.7    1.1e-69  219.8   3.7    1.0  1  VIMSS302354  


Domain annotation for each sequence (and alignments):
>> VIMSS302354  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.8   3.7   1.1e-69   1.1e-69       1     161 []       2     162 ..       2     162 .. 1.00

  Alignments for each domain:
  == domain 1  score: 219.8 bits;  conditional E-value: 1.1e-69
       DUF520   1 psfDivsevdlqevknAvdqakkeietRfDfkgskaeielkekekeitltaesefklkqvldilksklvkrgvdlkaldvgkvekasgkkvkqevklk 98 
                  psfDivsevdlqe +nAvd+a++e+e+RfDf++++a++el++ +k+i++ +es+f+++q+ldil++kl+krg++ ++ldv ++  +sgk++  e+klk
  VIMSS302354   2 PSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDASKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLK 99 
                  7************************************************************************************************* PP

       DUF520  99 egidkekakkivklikdsklkvqaqiqgdevRvtgkkrDdLQeviallkeedldlplqftNfr 161
                  +gi++ + kkivk+ikdsklkvqaqiqgde+Rvtgk+rDdLQ+v+a+++  dl++p+qf+Nfr
  VIMSS302354 100 QGIESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKNFR 162
                  **************************************************************9 PP



Or compare VIMSS302354 to CDD or PaperBLAST