REBASE::M.PspMBI7II has 679 amino acids
Query: DUF559 [M=109]
Accession: PF04480.16
Description: Protein of unknown function (DUF559)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.6e-40 121.3 1.7 1.4e-39 120.6 0.2 2.1 2 REBASE::M.PspMBI7II
Domain annotation for each sequence (and alignments):
>> REBASE::M.PspMBI7II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.1 0.12 0.12 41 78 .. 49 87 .. 12 121 .. 0.54
2 ! 120.6 0.2 1.4e-39 1.4e-39 4 108 .. 482 588 .. 479 589 .. 0.95
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.12
DUF559 41 igsYivD.fvclkaklivelDGaqhdeeeeyDaeRtelL 78
++i D f ++a li e +G + + e y ++ t +L
REBASE::M.PspMBI7II 49 FLKFISDkFELRQAELIAEGNGDYVHMVEFYTMTNTFYL 87
345555545556666777776666555555555555555 PP
== domain 2 score: 120.6 bits; conditional E-value: 1.4e-39
DUF559 4 kanarklRreqteaekkLWrllrnrrlsglkfrRqkpigsYivDfvclkaklivelDGaqhdee..eeyDaeRtelLeslGftvlRfknd 91
++ar+lR++qt+ae+ +W++lr r+l + kfrRq+p+g++i Df+c ++kl +elDG+qh++ + D++R+e+L+++G +v+Rf n
REBASE::M.PspMBI7II 482 LEFARELRKNQTDAEALIWQALRGRKLADAKFRRQHPVGHFIFDFYCHEHKLAIELDGSQHYQPeaLQADKARAEFLAQQGIRVIRFDNR 571
679***********************************************************9844579********************* PP
DUF559 92 evlknieevleeilkal 108
+vl ++e+vle+i+ al
REBASE::M.PspMBI7II 572 QVLVETEAVLESIYLAL 588
*************9876 PP
Or compare REBASE::M.PspMBI7II to CDD or PaperBLAST