PaperBLAST – Find papers about a protein or its homologs

 

Align NP_173156.1 to PF04502 (Saf4_Yju2)

NP_173156.1 has 331 amino acids

Query:       Saf4_Yju2  [M=333]
Accession:   PF04502.17
Description: Saf4/Yju2 protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.2e-105  337.8  15.1   6.2e-105  337.5  15.1    1.0  1  NP_173156.1  


Domain annotation for each sequence (and alignments):
>> NP_173156.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.5  15.1  6.2e-105  6.2e-105       1     299 [.       9     314 ..       9     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 337.5 bits;  conditional E-value: 6.2e-105
    Saf4_Yju2   1 kYyPPDfDpskiprerarknrqlvvRlmaPfnirCktCgeyIykGkkFNarkekVenetYlgipIfrFyiKCtrClaeiefkTDPkntdYvieeGatR 98 
                  kYyPPDfDp+k++r r++kn+q++vR+m+P+++rC tCg+yIykG+kFN+rke+V +etYlgi+IfrFy+KCt+C+ae+++kTDP+n+dY +e+Ga+R
  NP_173156.1   9 KYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASR 106
                  9************************************************************************************************* PP

    Saf4_Yju2  99 nfeaekleeeeakreekereeeeaedamkklEkrtkdskkemealesLeeLkelnqrqakvdyeamlelrrefreekkereeeeedeealkeklsl.. 194
                  n+e++++e+ee+++++++r++ee++damk+lE+rt dsk+em+++++L+e+k++++r+a+v+++amle+++++ +ek +r eee de+ +k+ +    
  NP_173156.1 107 NYEPWRAEDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTGAEKVKRIEEE-DEAVIKSIFGKqk 203
                  ***********************************************************************************9.******6663346 PP

    Saf4_Yju2 195 eiiellpede.edkkeaalve.gks......skelfessekskksekkskptdskkseaskkkkkeslkkslskltkkkallllvvrkkkkeesksks 284
                  e i+++ ++e +d+ +++ ++ + s       ++++ s+++++++ ++s+ptd+++s +s+++ ke +k+++sk+   k+ +  v++k+++++s+s++
  NP_173156.1 204 EVIRRIADEEiDDDYDDDDIDdYPSlqkekkGSSSDLSKKRKATEVSPSNPTDILTS-SSAENPKEPKKQAISKQP-FKSVHIKVIKKQPQPTSSSTP 299
                  999***999989988888888777787777644455666667778888888888854.446678888888888885.555577788888888666665 PP

    Saf4_Yju2 285 keekkeeekkeskee 299
                  + +k+ee+k++ +++
  NP_173156.1 300 APAKPEEKKSDGAAN 314
                  555555544443332 PP



Or compare NP_173156.1 to CDD or PaperBLAST