PaperBLAST – Find papers about a protein or its homologs

 

Align NP_567159.1 to PF04504 (DUF573)

NP_567159.1 has 345 amino acids

Query:       DUF573  [M=94]
Accession:   PF04504.18
Description: Protein of unknown function, DUF573
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-30   90.7   1.1    4.1e-30   90.7   1.1    2.0  2  NP_567159.1  


Domain annotation for each sequence (and alignments):
>> NP_567159.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   1.1   4.1e-30   4.1e-30       2      94 .]     141     228 ..     140     228 .. 0.97
   2 ?   -3.3   0.3      0.84      0.84      62      70 ..     300     308 ..     295     324 .. 0.43

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 4.1e-30
       DUF573   2 qrlWseeDEieiLqglldfksktgkspkddldafyeavkkslsfdvskeqlveKirrLkkkyenkakkakgkepsfskphdqklfelskkIWg 94 
                  qr+WseeDEi++Lq+++dfk++tg+sp d+ d f++ +kks+sfdvsk q+ +Kir+ k+ky       ++k +s +++hd+k+  l+ + Wg
  NP_567159.1 141 QRVWSEEDEISLLQAMIDFKAETGTSPWDHKDRFFDIAKKSISFDVSKVQFFDKIRSFKRKYFG-----DRKVRSVESDHDKKCLGLAVSFWG 228
                  9**************************************************************8.....55789******************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.84
       DUF573  62 kyenkakka 70 
                  k+++ + + 
  NP_567159.1 300 KWSKVSVET 308
                  333322222 PP



Or compare NP_567159.1 to CDD or PaperBLAST