NP_001237047.1 has 182 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-31 94.0 11.9 4.7e-31 93.8 11.9 1.1 1 NP_001237047.1
Domain annotation for each sequence (and alignments):
>> NP_001237047.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.8 11.9 4.7e-31 4.7e-31 3 150 .. 39 166 .. 37 167 .. 0.94
Alignments for each domain:
== domain 1 score: 93.8 bits; conditional E-value: 4.7e-31
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevfkiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvl 97
+++ +l+LR++++v+a+aa+++ma++++ f +++af+ylv+a++++a++s+ +++ +v++l++++s+++ ++++l+ ++D v+
NP_001237047.1 39 PGTAGGLSLRVSQFVFAAAALSIMASTSD------------FPSVTAFCYLVAAAGLQALWSFSLAITDVYALLVRRSLQNYRIVSLFTVGDGVT 121
678889***********************............****************************************************** PP
CASP_dom 98 aylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafl 150
++l+++Aa+A+a+++ l+ +++ C+q++ c ++++a+ ++fl ++
NP_001237047.1 122 STLTFAAACASAGITVLI-DNDLG-----SCSQNH--CVQFETATGMAFLCWF 166
***************666.55555.....8*****..*************997 PP
Or compare NP_001237047.1 to CDD or PaperBLAST