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Align Q9SQU2 to PF04535 (CASP_dom)

Q9SQU2 has 199 amino acids

Query:       CASP_dom  [M=151]
Accession:   PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-44  137.6   5.6    1.9e-44  137.3   5.6    1.1  1  Q9SQU2    


Domain annotation for each sequence (and alignments):
>> Q9SQU2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   5.6   1.9e-44   1.9e-44       4     151 .]      34     185 ..      32     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 1.9e-44
  CASP_dom   4 lrlaelvLRllalvlalaaavvmatnkqtkevf......kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvla 98 
               +r+++++ R+l + ++l+a++vm+t++qt++++       ++++a+f+d+paf+y+vva ++a++Y+l+++++s+  l++  +e++++  ++l+ lD+v++
    Q9SQU2  34 CRKIDIITRVLLFSATLTALIVMVTSDQTEMTQlpgvssPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLK--PEFTAQFSIYLASLDMVML 132
               6899*************************9999******************************************99987..899999************* PP

  CASP_dom  99 ylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
                +l+sA+++a +v+y+a kgn+e++W+kiCn+++kFc+ +a+++als++a+ll
    Q9SQU2 133 GILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIATSLALSLFASLL 185
               **************************************************975 PP



Or compare Q9SQU2 to CDD or PaperBLAST