SwissProt::O23413 has 190 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-41 127.2 3.7 3.3e-41 126.7 3.7 1.1 1 SwissProt::O23413
Domain annotation for each sequence (and alignments):
>> SwissProt::O23413
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.7 3.7 3.3e-41 3.3e-41 5 151 .] 25 177 .. 22 177 .. 0.95
Alignments for each domain:
== domain 1 score: 126.7 bits; conditional E-value: 3.3e-41
CASP_dom 5 rlaelvLRllalvlalaaavvmatnkqtkevf..........kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskal 86
+ +el +R+lal+l++aaa+v++++kqtk+v+ i+++ak s+l+af+y + +naia++Y+++++++ ++s +rsk+l
SwissProt::O23413 25 KGVELTMRVLALILTMAAATVLGVAKQTKVVSikliptlpplDITTTAKASYLSAFVYNISVNAIACGYTAISIAILMISRG----RRSKKL 112
6799************************************************************************997554....57778* PP
CASP_dom 87 alllfilDqvlaylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
+++++++D v+++ll+s+++Aa a+ ++ +gn+++ W+k+C +fgkFc+r+a ++ l++la+++
SwissProt::O23413 113 LMVVLLGDLVMVALLFSGTGAASAIGLMGLHGNKHVMWKKVCGVFGKFCHRAAPSLPLTLLAAVV 177
*************************************************************9985 PP
Or compare SwissProt::O23413 to CDD or PaperBLAST