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Align SwissProt::O24088 to PF04535 (CASP_dom)

SwissProt::O24088 has 234 amino acids

Query:       CASP_dom  [M=151]
Accession:   PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.3e-34  105.3   6.8    1.7e-34  104.9   6.8    1.1  1  SwissProt::O24088  


Domain annotation for each sequence (and alignments):
>> SwissProt::O24088  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   6.8   1.7e-34   1.7e-34       4     149 ..      64     216 ..      61     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 1.7e-34
           CASP_dom   4 lrlaelvLRllalvlalaaavvmatnkqtkevf.............kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkk... 79 
                        + +a lv+R++a+v++l+a++v+++++q++ v+             +++++ +++++++fry ++an+i +vYs lq++  v++l++kk   
  SwissProt::O24088  64 WYVALLVIRVFAFVFCLIAFSVLGASEQRVLVSenltnwyssgftiQTPYEFHWYKWDEFRYSFAANVIGFVYSGLQICHLVMYLITKKhti 155
                        56899***********************99999******************************************************99844 PP

           CASP_dom  80 serskalalllfilDqvlaylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflaf 149
                        +   k + ++ +++Dq lay+l+sA+s+aa++++l+k+      Wl+  ++ ++F ++++a+v++sflaf
  SwissProt::O24088 156 N--PKLQGYFNVAIDQTLAYILMSASSSAATAAHLLKDY-----WLE--HGADTFIEMANASVSMSFLAF 216
                        3..44599****************************999.....554..9*******************9 PP



Or compare SwissProt::O24088 to CDD or PaperBLAST