SwissProt::Q9SQU2 has 199 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-44 137.6 5.6 1.9e-44 137.3 5.6 1.1 1 SwissProt::Q9SQU2
Domain annotation for each sequence (and alignments):
>> SwissProt::Q9SQU2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.3 5.6 1.9e-44 1.9e-44 4 151 .] 34 185 .. 32 185 .. 0.97
Alignments for each domain:
== domain 1 score: 137.3 bits; conditional E-value: 1.9e-44
CASP_dom 4 lrlaelvLRllalvlalaaavvmatnkqtkevf......kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalall 89
+r+++++ R+l + ++l+a++vm+t++qt++++ ++++a+f+d+paf+y+vva ++a++Y+l+++++s+ l++ +e++++ ++
SwissProt::Q9SQU2 34 CRKIDIITRVLLFSATLTALIVMVTSDQTEMTQlpgvssPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLK--PEFTAQFSIY 123
6899*************************9999******************************************99987..899999**** PP
CASP_dom 90 lfilDqvlaylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
l+ lD+v++ +l+sA+++a +v+y+a kgn+e++W+kiCn+++kFc+ +a+++als++a+ll
SwissProt::Q9SQU2 124 LASLDMVMLGILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIATSLALSLFASLL 185
***********************************************************975 PP
Or compare SwissProt::Q9SQU2 to CDD or PaperBLAST