PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10089823 to PF04535 (DUF588)

VIMSS10089823 has 179 amino acids

Query:       DUF588  [M=150]
Accession:   PF04535.12
Description: Domain of unknown function (DUF588)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-32   97.7  14.4    3.6e-32   97.4  14.4    1.1  1  VIMSS10089823  


Domain annotation for each sequence (and alignments):
>> VIMSS10089823  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4  14.4   3.6e-32   3.6e-32       2     150 .]      35     164 ..      34     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 3.6e-32
         DUF588   2 rklrvaelvLRlaavvlalaaavvmatnkqtkevfkiqveakfsdlpafvylvvanaiaavYsllqlvlsvvslvrkk.ersaalalllfllDqvl 96 
                    +++++++l+LR++++++a+aa++vma++++            f +++af+ylv+a ++++++sl++++++v+++++k+  ++++l++l++++D v+
  VIMSS10089823  35 MPGTLLGLALRFFQFLFAAAALCVMASTSD------------FPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRsLQNRRLVSLFAIGDGVT 118
                    578899************************............*************************************9999************* PP

         DUF588  97 aylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcervaaavalsflafll 150
                    ++l+++Aa+A+a+++ l+ +        + C q++  c ++++++al+f+++++
  VIMSS10089823 119 STLTFAAACASAGITVLIDND-L-----NSCAQNH--CVQFETSTALAFISWFA 164
                    ***************777555.4.....48**999..***************85 PP



Or compare VIMSS10089823 to CDD or PaperBLAST