VIMSS10091005 has 188 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-31 93.6 0.7 6.9e-31 93.2 0.7 1.1 1 VIMSS10091005
Domain annotation for each sequence (and alignments):
>> VIMSS10091005
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.2 0.7 6.9e-31 6.9e-31 3 151 .] 43 170 .. 41 170 .. 0.92
Alignments for each domain:
== domain 1 score: 93.2 bits; conditional E-value: 6.9e-31
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevfkiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvla 98
+++a+ + R ++l+++l+a+++m++nk+ + +f+d++++ry++++++i+++Y+++q+++++ + + ++++ l++f +Dq++a
VIMSS10091005 43 LIKKASPITRGICLLFSLIAFLIMVSNKH-------GYGRNFNDYEEYRYVLAISIISTLYTAWQTFAHFSKR---EIFDRRTSILVDFSGDQIVA 128
5788999**********************.......699*****************************99533...33555569************ PP
CASP_dom 99 ylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
yll+sAas+a+ +++ ++g q + F++++a+a++++++af++
VIMSS10091005 129 YLLISAASSAIPLTNIFREG-----------QDNIFTDSAASAISMAIFAFIA 170
********************...........8889****************86 PP
Or compare VIMSS10091005 to CDD or PaperBLAST