VIMSS10091115 has 174 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-25 75.6 7.1 2.2e-25 75.3 7.1 1.1 1 VIMSS10091115
Domain annotation for each sequence (and alignments):
>> VIMSS10091115
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.3 7.1 2.2e-25 2.2e-25 3 151 .] 12 158 .. 10 158 .. 0.95
Alignments for each domain:
== domain 1 score: 75.3 bits; conditional E-value: 2.2e-25
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevfkiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfilDqvla 98
+l+++ l+LR+l+ v+ ++a++++ tn+ t + + +k +f+d+ a+ry++ a++i vY+++ql++++ +++++ +++ l+f +D +++
VIMSS10091115 12 SLKVLLLLLRVLTGVFLVIALIILSTNSVTIVSQGSALKFHFKDVYAYRYMLSAAVIGLVYAVIQLFFTISEFATGV--KNPFNYQLDFYGDKLIS 105
578999***********************9999999*************************************9985..555589*********** PP
CASP_dom 99 ylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
yl++++++A ++v++ +k+ ++ l+ + ++kF+++ a+++l ++af++
VIMSS10091115 106 YLVATGSAAGFGVTKDLKDTFLALVALDSTDPVDKFFSKGYASASLLLFAFIC 158
************************99*************************97 PP
Or compare VIMSS10091115 to CDD or PaperBLAST