PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10097899 to PF04535 (DUF588)

VIMSS10097899 has 194 amino acids

Query:       DUF588  [M=150]
Accession:   PF04535.12
Description: Domain of unknown function (DUF588)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-36  112.1   8.8    1.6e-36  111.5   8.8    1.2  1  VIMSS10097899  


Domain annotation for each sequence (and alignments):
>> VIMSS10097899  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   8.8   1.6e-36   1.6e-36       5     150 .]      34     168 ..      31     168 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.6e-36
         DUF588   5 rvaelvLRlaavvlalaaavvmatnkqtkevfkiqveakfsdlpafvylvvanaiaavYsllqlvlsvvslvrkk..ersaalalllfllDqvlay 98 
                    +++ l+LRla + ++la+av+m tn+        + + +++d++af++++vanai+a+Ys++++  +v++++r++    +a +++++f +Dqv++y
  VIMSS10097899  34 NSLILLLRLASFSFSLASAVFMLTNSR------GSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETtlWPEAFQVWFDFGHDQVFSY 123
                    56779*********************9......68899***********************************99**67779************** PP

         DUF588  99 lllsAasAaaavvylakkgnseaqWlkiCnqfgkFcervaaavalsflafll 150
                    lllsA sAaaa ++ ++ g       + C ++++Fc +  +a+ l f+afl+
  VIMSS10097899 124 LLLSAGSAAAALARTMRGG-------DTCTANKAFCLQSDVAIGLGFAAFLF 168
                    *******************.......59**********************86 PP



Or compare VIMSS10097899 to CDD or PaperBLAST