XP_009390339.1 has 180 amino acids
Query: CASP_dom [M=151]
Accession: PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-24 73.0 2.3 1.2e-24 73.0 2.3 1.5 2 XP_009390339.1
Domain annotation for each sequence (and alignments):
>> XP_009390339.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.0 2.3 1.2e-24 1.2e-24 3 116 .. 7 125 .. 5 133 .. 0.93
2 ? -2.4 0.5 0.2 0.2 18 27 .. 158 167 .. 147 178 .. 0.58
Alignments for each domain:
== domain 1 score: 73.0 bits; conditional E-value: 1.2e-24
CASP_dom 3 klrlaelvLRllalvlalaaavvmatnkqtkevf.....kiqkkakfsdlpafrylvvanaiaavYsllqlvlsvvslvrkkserskalalllfi 92
+++++ lvLR++++++ l+++vv+at++ t+ +++++ f+d+ a+ry++ +++i +vY+llql++++ +++r+k+ ++ l ++
XP_009390339.1 7 AGSITVLVLRVFVFLFLLVSLVVIATDTVTVLDPdsdseSVTTTLGFKDVIAYRYVFSVAVIGCVYTLLQLPFAALNIIRGKKFIGRNTFPLYIF 101
678999**********************9755559***********************************************888888999**** PP
CASP_dom 93 lDqvlaylllsAasAaaavvylak 116
+D v++ l +s+++A ++++ +k
XP_009390339.1 102 IDLVFSLLFASGVGAGFGITVDLK 125
********************9886 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.2
CASP_dom 18 lalaaavvma 27
+ l+a v ma
XP_009390339.1 158 FVLVATVCMA 167
4444444443 PP
Or compare XP_009390339.1 to CDD or PaperBLAST