PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011069377.1 to PF04535 (CASP_dom)

XP_011069377.1 has 98 amino acids

Query:       CASP_dom  [M=151]
Accession:   PF04535.16
Description: Casparian strip membrane protein domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-13   36.7   0.3    2.4e-13   36.3   0.3    1.2  1  XP_011069377.1  


Domain annotation for each sequence (and alignments):
>> XP_011069377.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.3   2.4e-13   2.4e-13      64     151 .]       1      82 [.       1      82 [. 0.95

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.4e-13
        CASP_dom  64 sllqlvlsvvslvrkkserskalalllfilDqvlaylllsAasAaaavvylakkgnseaqWlkiCnqfgkFcnrvaaavalsflafll 151
                     +llq++++++++++++++      ll+f +D +l+y+l+++a+A ++ +  ++ g  +       +  ++F n+++aa+al f+af++
  XP_011069377.1   1 TLLQTAFTIFQVSTGNRLGGDGFTLLDFYGDKALSYMLATGAAAGFGLTVDLNRGSGS------DSDTKSFLNKANAAAALLFIAFIF 82 
                     589*************************************************999655......789999****************96 PP



Or compare XP_011069377.1 to CDD or PaperBLAST