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Align NP_568825.1 to PF04577 (DUF563)

NP_568825.1 has 534 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-27   81.4   0.6    3.5e-26   78.7   0.0    2.4  3  NP_568825.1  


Domain annotation for each sequence (and alignments):
>> NP_568825.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.13      0.13      73     122 ..      97     147 ..      76     176 .. 0.62
   2 ?   -1.0   0.1     0.087     0.087     116     138 ..     189     211 ..     175     225 .. 0.73
   3 !   78.7   0.0   3.5e-26   3.5e-26       3     207 ..     249     511 ..     247     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.13
       DUF563  73 pprssggfqgallpklrdrlrerlnlekr..kkptrvlyisRlkagsRrilN 122
                  p  ++gg  +++   +++ l +++   +     p r+ ++sR   +   +  
  NP_568825.1  97 PRIGGGGEGSWFRCFYSETLQSSICEGRNlrMVPDRI-VMSRGGEKLEEVMG 147
                  4555555555555566666666666666577677566.99995444444433 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.087
       DUF563 116 gsRrilNeeevl.kllpkrgfevv 138
                   sRr++N +e+l +++++ g+++ 
  NP_568825.1 189 VSRRLVN-DEMLnEYMQEGGIDRH 211
                  39*****.5555488888887765 PP

  == domain 3  score: 78.7 bits;  conditional E-value: 3.5e-26
       DUF563   3 ygHwlvdvlprlllleqlvlddd.drilvpalaspqpfqrell.kllgirpekrikveldepvhveklivpvppr...............ssggfqga 83 
                   +H ++d+ + ++  + ++l +   +++v+   +    ++e++  l+      r+     +pv+++++i++  ++               +       
  NP_568825.1 249 LFHTVTDWYSAYVSSRVTGLPNRpHVVFVDG--HCTTQLEETWtALF---SGIRYAKNFTKPVCFRHAILSPLGYetalfkglsgeidckG------- 334
                  45**********9999888888834444777..77788889994444...45888788899*****9999999997776666666666441....... PP

       DUF563  84 llp..................klrdrlrerlnlekr.....kkp..........trvlyisR.......lkag....sRrilNeeevl.......... 127
                                       ++ +++r++++l+        kp          ++vl++ R       +       + r++Neeev+          
  NP_568825.1 335 --DsahnlwqnpddkrtarisEFGEMIRAAFGLPVNrhrslEKPlssssssasvYNVLFVRRedylahpR--HggkvQSRLINEEEVFdslhhwvatg 428
                  ..0333444456777888899*************988888844456666778899999****88877542..256899*********99999999999 PP

       DUF563 128 .kllpkrgfevvd..peslsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldnsfenlaallglkyayvlg 207
                     l+k g++ v+  ++++s+++q++  ++a+vi+g hG+glt+++ + p+tt+ e+++    +++fe +a+++gl+y++++ 
  NP_568825.1 429 sTGLTKCGINLVNglLAHMSMKDQVRAIQDASVIIGAHGAGLTHIVSATPNTTIFEIISVEFQRPHFELIAKWKGLEYHAMHL 511
                  99999*********999****************************************999999999*************9975 PP



Or compare NP_568825.1 to CDD or PaperBLAST