PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q5Z8T8 to PF04577 (DUF563)

SwissProt::Q5Z8T8 has 465 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      7e-23   68.0   0.4    1.2e-22   67.2   0.1    1.5  2  SwissProt::Q5Z8T8  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q5Z8T8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.1   1.2e-22   1.2e-22       2     186 ..     181     379 ..     180     384 .. 0.72
   2 ?   -3.1   0.0      0.39      0.39      37      70 ..     430     463 ..     409     464 .. 0.58

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.2e-22
             DUF563   2 nygHwlvdvlprl.llleqlvlddddrilvpalaspqpfqrellkllgirpekrikveldepvhve.klivpvpprssggfqgallp..... 86 
                        ny+H + d + +l ++ ++l  + +  +     +   +++ e++   g+++ + ++++ +++v+++ ++ v  +++ + + +++  p     
  SwissProt::Q5Z8T8 181 NYYHDFNDNIIPLfITSRHLAGEVQLLVTQKQRWWFGKYR-EIV--EGLTKYEPVDLDAEQRVRCYrRATVGLHSHKDLSIDPRRAPnnysm 269
                        5666666665555266666655555333333333444665.788..7888899999999999999864444444443333333333355666 PP

             DUF563  87 .klrdrlrerlnlekr...........kkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpe.slsfeeqiklfssakvivgphGsg 165
                          + ++l+ r++l++            kkp r+l+i+R   ++Rr++N +e++++ ++ gfev   e +  +   +  ++s +++v++hGsg
  SwissProt::Q5Z8T8 270 vDFKRFLMWRYALPREhairmeeedksKKP-RLLVINR--RSRRRFVNLDEIVAAAEGVGFEVAAAElDAHIPAAASAVNSYDAMVAVHGSG 358
                        666666666666666666666666666777.*******..89***********************999999********************* PP

             DUF563 166 ltnliFmppgttvielvppnr 186
                        ltnl+F+p +++vi +vp +r
  SwissProt::Q5Z8T8 359 LTNLVFLPMNAVVIQVVPLGR 379
                        *******99*****9988666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.39
             DUF563  37 q...pfqrellkllgirpekrikveldepvhvekliv 70 
                        +   + +++++  lg+ ++ r++v   +pv +++l++
  SwissProt::Q5Z8T8 430 KqswSLVKDIY--LGQ-QDVRLDVRRFRPVLLKALHL 463
                        12334555666..888.99999999889888888775 PP



Or compare SwissProt::Q5Z8T8 to CDD or PaperBLAST