PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q6Z7I3 to PF04577 (DUF563)

SwissProt::Q6Z7I3 has 566 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.5e-28   84.2   0.0    1.3e-27   83.5   0.0    1.4  1  SwissProt::Q6Z7I3  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q6Z7I3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.3e-27   1.3e-27       2     193 ..     281     491 ..     280     507 .. 0.81

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.3e-27
             DUF563   2 nygHwlvdvlprl.llleqlvlddddrilvpalaspqpfqrellkllgi.rpekrikveldepvhve...........klivpvpprssggf 80 
                        n++H ++d + +l l++ +l  + +  il+ +  + + +++ +  ll   ++ + i  + d  vh+            +li++ +p+  +++
  SwissProt::Q6Z7I3 281 NFFHDMTDAMIPLfLTTAHLKGEVQ--ILITN--YKPWWVQKYTPLLRKlSNYDVINFDEDAGVHCFpqgylglyrdrDLIISPHPT--RNP 366
                        899******8888688888888888..66666..677777777777777699************************98665555555..444 PP

             DUF563  81 qgallpklrdrlrerlnlekr..........kkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpe.slsfeeqiklfssakvivgp 161
                        +++    + ++lr++l+l++            +p r l+isR  ag R++lN eev+++ ++ gf+v   e   ++   ++l++sa+v+ ++
  SwissProt::Q6Z7I3 367 RNYTMVDYNRFLRDALELRRDrpsvlgeepgMRP-RMLIISR--AGTRKLLNLEEVAAAATELGFNVTVAEaGADVPAFAALVNSADVLLAV 455
                        4555557778888888888755557776666666.*******..**********************99988899****************** PP

             DUF563 162 hGsgltnliFmppgttvielvppnrldns....fen 193
                        hG+gltn iF+p +++v+ +vp +++d+     + +
  SwissProt::Q6Z7I3 456 HGAGLTNQIFLPAEAVVVQIVPWGNMDWMatnfYGQ 491
                        ***********************9999876654444 PP



Or compare SwissProt::Q6Z7I3 to CDD or PaperBLAST