PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10094098 to PF04577 (Glyco_transf_61)

VIMSS10094098 has 470 amino acids

Query:       Glyco_transf_61  [M=136]
Accession:   PF04577.18
Description: Glycosyltransferase 61
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-17   48.9   0.2    1.6e-16   47.1   0.1    1.9  2  VIMSS10094098  


Domain annotation for each sequence (and alignments):
>> VIMSS10094098  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.11      0.11      58      79 ..     216     237 ..     147     253 .. 0.73
   2 !   47.1   0.1   1.6e-16   1.6e-16      36     136 .]     277     373 ..     261     373 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.11
  Glyco_transf_61  58 tryvyisRkksgkRrilNeeel 79 
                      ++ ++i++ k   R+++N+e +
    VIMSS10094098 216 KNLLWINKFKELVRKLSNYEVI 237
                      5666666666666777776655 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 1.6e-16
  Glyco_transf_61  36 glglaklrkllrakfnlskikp.....tryvyisRkksgkRrilNeeellealkkefggikfeivdpekl.sleeqvklfssakvivgphGSal 123
                      +     +rk+lr++++l +        +r++++sR  s++R ++N  e+++a+++  g   f++v  e    +++ + +++s++v+ g+hG+++
    VIMSS10094098 277 S----DFRKFLRDTYSLRNSAVttrrkPRILILSR--SRSRAFVNAGEIARAARQI-G---FKVVVAEANtEIASFAITVNSCDVMLGVHGAGM 360
                      3....3344444444444333334444********..9*****************9.8...6666665554999******************** PP

  Glyco_transf_61 124 tnlifmppgtvvv 136
                      tn++f+p+++ v+
    VIMSS10094098 361 TNMVFLPDNAIVI 373
                      ********99886 PP



Or compare VIMSS10094098 to CDD or PaperBLAST