PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6591791 to PF04577 (Glyco_transf_61)

VIMSS6591791 has 561 amino acids

Query:       Glyco_transf_61  [M=136]
Accession:   PF04577.18
Description: Glycosyltransferase 61
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-14   38.8   0.1    3.5e-13   36.2   0.0    2.0  2  VIMSS6591791  


Domain annotation for each sequence (and alignments):
>> VIMSS6591791  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.057     0.057       1      65 [.     200     292 ..     183     333 .. 0.59
   2 !   36.2   0.0   3.5e-13   3.5e-13      36     130 ..     371     468 ..     349     477 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.057
  Glyco_transf_61   1 ygHflldflprlvlvp..................vfaerlivpssprphhglvglglaklrkllrakfnlskikp.............tryvyi 63 
                      y+Hf  + l  l   +                   +  r+i+p+ +  + + ++++++ l+++++++++ +  ++             +r+v+ 
     VIMSS6591791 200 YYHFAAELLLGL---WrtyssldptisaqgvthlPSPSRMIFPHVSAGKWNDYAKMNSYLSRAIFPSMSYEYQNDfldrvdtgrafllERVVFA 290
                      667777766666...4444555555444444444222222333333333333333333333333333333322224444444555555666666 PP

  Glyco_transf_61  64 sR 65 
                      +R
     VIMSS6591791 291 DR 292
                      66 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 3.5e-13
  Glyco_transf_61  36 glglaklrkllrakfnlskikptryvyisRkksgkRrilNe..eellealkkefg...gikfeivdpeklsleeqvklfssakvivgphGSalt 124
                        + +++r+++ ++ + +  k + + y+sR++ g+R +  e  + l+++l +  +   g ++ iv + kl+ eeq++l + + +++g+hG +lt
     VIMSS6591791 371 EEEKEEVREKIMKEKEAEASK-PVITYVSRQDWGRRMLKKEshDSLVKELHDL-EekyGWEVNIVSMDKLTREEQIRLSARTTIMMGVHGNGLT 462
                      555677888888888888877.99******99999999887445688777554.334469999******************************* PP

  Glyco_transf_61 125 nlifmp 130
                      +l++m+
     VIMSS6591791 463 HLLWMN 468
                      ****97 PP



Or compare VIMSS6591791 to CDD or PaperBLAST