PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS97459 to PF04577 (DUF563)

VIMSS97459 has 350 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-31   95.0   0.0    4.6e-31   94.7   0.0    1.1  1  VIMSS97459  


Domain annotation for each sequence (and alignments):
>> VIMSS97459  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   4.6e-31   4.6e-31       2     208 ..     117     313 ..     116     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 4.6e-31
      DUF563   2 nygHwlvdvlprlllleqlvlddddrilvpalaspqpfqrellkllgirpekrikveldepvhveklivpvpprssggfqgallpklrdrlrerlnlek 100
                 ny+ +++++lp l+  ++++   d ++++p+      +q++ll l g+ +   i    +++v + +++++ pp   +  ++a+l ++r+r++++ ++ +
  VIMSS97459 117 NYAGFVLNTLPALVEASKAGVLADHPLVTPP---LTRWQADLLTLAGL-ASPLI--NAAPWVVLDEAVLSPPPS--PVATHAMLAEVRERVLATPGPAS 207
                 899**********777777666666888888...678***********.77777..5579******99999999..77788888899999999999999 PP

      DUF563 101 rkkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpeslsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldnsfenlaallg 199
                   +p ++ y+sR++a +  ++ ee v+ +l+  g+ +v+pe+ s +e i lf++akviv+p+G  l+n++F+  +++++e+ pp+ +  + + la l+g
  VIMSS97459 208 GARP-KL-YVSRADAMNAVMVDEEGVEIELAALGYTIVRPETSSTRELIGLFREAKVIVAPTGTVLANALFCAADAQIVEIRPPGANGLWVRDLAVLAG 304
                 7888.88.******************************************************************************************* PP

      DUF563 200 lkyayvlge 208
                   ++++ ++
  VIMSS97459 305 ATWHGFDAP 313
                 ***998765 PP



Or compare VIMSS97459 to CDD or PaperBLAST