PaperBLAST – Find papers about a protein or its homologs

 

Align WP_005816696.1 to PF04577 (DUF563)

WP_005816696.1 has 395 amino acids

Query:       DUF563  [M=209]
Accession:   PF04577.14
Description: Protein of unknown function (DUF563)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-29   88.5   0.0    7.1e-29   87.5   0.0    1.4  2  WP_005816696.1  


Domain annotation for each sequence (and alignments):
>> WP_005816696.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.53      0.53     153     164 ..      84      95 ..      55      96 .. 0.62
   2 !   87.5   0.0   7.1e-29   7.1e-29       2     198 ..     149     359 ..     148     365 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.53
          DUF563 153 ssakvivgphGs 164
                      +++v+++p G+
  WP_005816696.1  84 YESDVVITPKGA 95 
                     378899999887 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 7.1e-29
          DUF563   2 nygHwlvdvlprl.llleqlvlddddrilvpalaspqpfqrell.kl.lgirpekrikveldepvhveklivpvppr...ssggfqgallpklrd 90 
                     ++gH++ ++lp+l  + e+ +ldd++ ilv +  +  + + e++ ++  + +++k+ +++++ ++++e l+++ +p    +++ f+   +  +++
  WP_005816696.1 149 HWGHCMYQFLPKLfSAGEAGLLDDSITILVVE--NEDATIMEIInSYlTNYPNAKIKFITKKIDYTCEVLYFMPSPGssfNGPKFRLDYPYYISR 241
                     9************8888888888887777777..6666666777555145555555556677**********99999554333333333334444 PP

          DUF563  91 rlrerlnlekr..........kkptrvlyisRlkagsRrilNeeevlkllpkrgfevvdpeslsfeeqiklfssakvivgphGsgltnliFmppg 175
                     +++++ +              k+++ ++++ R  ++ R+++N+eev +++++ g+  ++ ++lsfee + lf +ak ivg  Gs + nl+F++  
  WP_005816696.1 242 HVLDKTKKYIIdpiiekvkddKPKYDKIFLPR-AGRIRNLTNYEEVHNYFKELGYVDIEGADLSFEEKAGLFYHAKEIVGLYGSSILNLMFCNQA 335
                     4444444333344456665533447788****.899********************************************************998 PP

          DUF563 176 ttvielvppnrldns.fenlaall 198
                     + ++ +  +   d+s + ++ +++
  WP_005816696.1 336 KSMVLINYRMSTDTSlYLQIRDYV 359
                     999999666666666877776655 PP



Or compare WP_005816696.1 to CDD or PaperBLAST