PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10086113 to PF04759 (DUF617)

VIMSS10086113 has 226 amino acids

Query:       DUF617  [M=159]
Accession:   PF04759.17
Description: Protein of unknown function, DUF617
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-63  198.2   0.0    6.2e-63  197.8   0.0    1.1  1  VIMSS10086113  


Domain annotation for each sequence (and alignments):
>> VIMSS10086113  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   6.2e-63   6.2e-63       1     159 []      76     225 ..      76     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 6.2e-63
         DUF617   1 vtgtlfGkrrgrvslaiqedp..kskplllleLavptsalakemasglvriaLecekkkekkkkklleepvwtvycnGrkvGyavrreaseedlkv 94 
                    vtgt++G+rrg+vs+++q+d+  +s+plllleLavpt+ala+em++g++riaL ++++++++   +++ pvw++ycnGrk+G+avrre++e+d+  
  VIMSS10086113  76 VTGTFYGHRRGHVSFCLQDDTrpSSPPLLLLELAVPTAALAREMEEGFLRIALRSKSNRRSS---IFNVPVWSMYCNGRKFGFAVRRETTENDVGF 168
                    89****************88766899***************************987665443...89***************************** PP

         DUF617  95 lkllrsvsvGaGvlpaeeeeeeeegelmYlRakfervvgskdsesfylinpdgssgqeLsifllR 159
                    l+l++svsvGaGv+p+        ge +YlRakferv+gs+dsesf+++n  g  gqeLsifl R
  VIMSS10086113 169 LRLMQSVSVGAGVIPN--------GETLYLRAKFERVTGSSDSESFHMVNQGGGYGQELSIFLSR 225
                    ***************8........889************************************98 PP



Or compare VIMSS10086113 to CDD or PaperBLAST